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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

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        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2023-04-14, 22:44 based on data in: /mnt/Timina/bioinfoII/amarin/RNAseq2/QC


        General Statistics

        Showing 217/217 rows and 3/5 columns.
        Sample Name% Dups% GCM Seqs
        SRR5088813_GSM2420259_Pt1_Pre_AD101148-6_Homo_sapiens_RNA-Seq_1
        71.1%
        46%
        52.0
        SRR5088813_GSM2420259_Pt1_Pre_AD101148-6_Homo_sapiens_RNA-Seq_2
        76.6%
        46%
        52.0
        SRR5088814_GSM2420260_Pt1_On_AD174047-6_Homo_sapiens_RNA-Seq_1
        79.6%
        46%
        52.6
        SRR5088814_GSM2420260_Pt1_On_AD174047-6_Homo_sapiens_RNA-Seq_2
        78.2%
        46%
        52.6
        SRR5088815_GSM2420261_Pt2_Pre_AD101150-6_Homo_sapiens_RNA-Seq_1
        68.4%
        47%
        50.2
        SRR5088815_GSM2420261_Pt2_Pre_AD101150-6_Homo_sapiens_RNA-Seq_2
        73.1%
        47%
        50.2
        SRR5088816_GSM2420262_Pt2_On_AD174046-6_Homo_sapiens_RNA-Seq_1
        78.8%
        46%
        50.7
        SRR5088816_GSM2420262_Pt2_On_AD174046-6_Homo_sapiens_RNA-Seq_2
        75.3%
        46%
        50.7
        SRR5088817_GSM2420263_Pt23_On_AD486568-8_Homo_sapiens_RNA-Seq_1
        78.5%
        47%
        49.2
        SRR5088817_GSM2420263_Pt23_On_AD486568-8_Homo_sapiens_RNA-Seq_2
        82.1%
        47%
        49.2
        SRR5088818_GSM2420264_Pt23_Pre_AD313075-5_Homo_sapiens_RNA-Seq_1
        84.8%
        47%
        50.6
        SRR5088818_GSM2420264_Pt23_Pre_AD313075-5_Homo_sapiens_RNA-Seq_2
        81.8%
        47%
        50.6
        SRR5088819_GSM2420265_Pt39_Pre_AD485899-5_Homo_sapiens_RNA-Seq_1
        84.3%
        45%
        53.6
        SRR5088819_GSM2420265_Pt39_Pre_AD485899-5_Homo_sapiens_RNA-Seq_2
        81.7%
        46%
        53.6
        SRR5088820_GSM2420266_Pt58_On_AE045812-10_Homo_sapiens_RNA-Seq_1
        79.8%
        46%
        52.2
        SRR5088820_GSM2420266_Pt58_On_AE045812-10_Homo_sapiens_RNA-Seq_2
        77.6%
        46%
        52.2
        SRR5088821_GSM2420267_Pt59_Pre_AD823915-5_Homo_sapiens_RNA-Seq_1
        80.8%
        47%
        51.8
        SRR5088821_GSM2420267_Pt59_Pre_AD823915-5_Homo_sapiens_RNA-Seq_2
        77.7%
        48%
        51.8
        SRR5088822_GSM2420268_Pt82_Pre_AD823914-8_Homo_sapiens_RNA-Seq_1
        79.1%
        46%
        50.8
        SRR5088822_GSM2420268_Pt82_Pre_AD823914-8_Homo_sapiens_RNA-Seq_2
        82.7%
        46%
        50.8
        SRR5088823_GSM2420269_Pt82_On_AD125218-6_Homo_sapiens_RNA-Seq_1
        70.1%
        47%
        51.8
        SRR5088823_GSM2420269_Pt82_On_AD125218-6_Homo_sapiens_RNA-Seq_2
        74.6%
        47%
        51.8
        SRR5088824_GSM2420270_Pt49_Pre_AD667851-6_Homo_sapiens_RNA-Seq_1
        80.9%
        47%
        53.6
        SRR5088824_GSM2420270_Pt49_Pre_AD667851-6_Homo_sapiens_RNA-Seq_2
        79.5%
        48%
        53.6
        SRR5088825_GSM2420271_Pt49_On_AD681976-5_Homo_sapiens_RNA-Seq_1
        79.4%
        48%
        50.6
        SRR5088825_GSM2420271_Pt49_On_AD681976-5_Homo_sapiens_RNA-Seq_2
        75.8%
        49%
        50.6
        SRR5088826_GSM2420272_Pt66_Pre_AD667850-6_Homo_sapiens_RNA-Seq_1
        73.7%
        47%
        50.5
        SRR5088826_GSM2420272_Pt66_Pre_AD667850-6_Homo_sapiens_RNA-Seq_2
        69.7%
        47%
        50.5
        SRR5088827_GSM2420273_Pt76_Pre_AD667852-6_Homo_sapiens_RNA-Seq_1
        85.5%
        46%
        51.7
        SRR5088827_GSM2420273_Pt76_Pre_AD667852-6_Homo_sapiens_RNA-Seq_2
        82.9%
        46%
        51.7
        SRR5088828_GSM2420274_Pt81_On_AD681973-5_Homo_sapiens_RNA-Seq_1
        86.8%
        47%
        57.8
        SRR5088828_GSM2420274_Pt81_On_AD681973-5_Homo_sapiens_RNA-Seq_2
        82.7%
        47%
        57.8
        SRR5088829_GSM2420275_Pt85_Pre_AD486329-5_Homo_sapiens_RNA-Seq_1
        76.6%
        46%
        53.1
        SRR5088829_GSM2420275_Pt85_Pre_AD486329-5_Homo_sapiens_RNA-Seq_2
        72.8%
        47%
        53.1
        SRR5088830_GSM2420276_Pt85_On_AE070989-10_Homo_sapiens_RNA-Seq_1
        73.5%
        47%
        50.1
        SRR5088830_GSM2420276_Pt85_On_AE070989-10_Homo_sapiens_RNA-Seq_2
        69.1%
        47%
        50.1
        SRR5088831_GSM2420277_Pt89_Pre_AE070951-5_Homo_sapiens_RNA-Seq_1
        84.2%
        48%
        63.4
        SRR5088831_GSM2420277_Pt89_Pre_AE070951-5_Homo_sapiens_RNA-Seq_2
        80.3%
        48%
        63.4
        SRR5088832_GSM2420278_Pt89_On_AE070987-5_Homo_sapiens_RNA-Seq_1
        78.1%
        47%
        51.5
        SRR5088832_GSM2420278_Pt89_On_AE070987-5_Homo_sapiens_RNA-Seq_2
        74.8%
        47%
        51.5
        SRR5088833_GSM2420279_Pt93_On_AE070988-5_Homo_sapiens_RNA-Seq_1
        82.5%
        47%
        62.0
        SRR5088833_GSM2420279_Pt93_On_AE070988-5_Homo_sapiens_RNA-Seq_2
        78.0%
        47%
        62.0
        SRR5088834_GSM2420280_Pt101_Pre_AD486328-5_Homo_sapiens_RNA-Seq_1
        83.1%
        48%
        53.3
        SRR5088834_GSM2420280_Pt101_Pre_AD486328-5_Homo_sapiens_RNA-Seq_2
        79.9%
        48%
        53.3
        SRR5088835_GSM2420281_Pt101_On_AD681975-5_Homo_sapiens_RNA-Seq_1
        84.0%
        47%
        62.0
        SRR5088835_GSM2420281_Pt101_On_AD681975-5_Homo_sapiens_RNA-Seq_2
        80.4%
        48%
        62.0
        SRR5088836_GSM2420282_Pt47_Pre_AD506073-6_Homo_sapiens_RNA-Seq_1
        76.8%
        46%
        53.8
        SRR5088836_GSM2420282_Pt47_Pre_AD506073-6_Homo_sapiens_RNA-Seq_2
        73.6%
        46%
        53.8
        SRR5088837_GSM2420283_Pt47_On_AD530367-6_Homo_sapiens_RNA-Seq_1
        74.5%
        46%
        52.0
        SRR5088837_GSM2420283_Pt47_On_AD530367-6_Homo_sapiens_RNA-Seq_2
        70.9%
        46%
        52.0
        SRR5088838_GSM2420284_Pt52_On_AD530365-6_Homo_sapiens_RNA-Seq_1
        76.3%
        47%
        50.5
        SRR5088838_GSM2420284_Pt52_On_AD530365-6_Homo_sapiens_RNA-Seq_2
        73.0%
        47%
        50.5
        SRR5088839_GSM2420285_Pt52_Pre_AD506075-6_Homo_sapiens_RNA-Seq_1
        85.3%
        46%
        48.8
        SRR5088839_GSM2420285_Pt52_Pre_AD506075-6_Homo_sapiens_RNA-Seq_2
        80.9%
        46%
        48.8
        SRR5088840_GSM2420286_Pt67_Pre_AD506074-6_Homo_sapiens_RNA-Seq_1
        86.7%
        50%
        50.3
        SRR5088840_GSM2420286_Pt67_Pre_AD506074-6_Homo_sapiens_RNA-Seq_2
        83.8%
        50%
        50.3
        SRR5088841_GSM2420287_Pt67_On_AD530366-6_Homo_sapiens_RNA-Seq_1
        91.9%
        50%
        60.4
        SRR5088841_GSM2420287_Pt67_On_AD530366-6_Homo_sapiens_RNA-Seq_2
        89.8%
        50%
        60.4
        SRR5088842_GSM2420288_Pt94_On_AE373242-6_Homo_sapiens_RNA-Seq_1
        84.4%
        48%
        51.7
        SRR5088842_GSM2420288_Pt94_On_AE373242-6_Homo_sapiens_RNA-Seq_2
        81.3%
        48%
        51.7
        SRR5088843_GSM2420289_Pt94_Pre_AD732850-6_Homo_sapiens_RNA-Seq_1
        76.9%
        47%
        51.1
        SRR5088843_GSM2420289_Pt94_Pre_AD732850-6_Homo_sapiens_RNA-Seq_2
        73.9%
        48%
        51.1
        SRR5088844_GSM2420290_Pt105_On_AE373241-6_Homo_sapiens_RNA-Seq_1
        80.4%
        47%
        61.2
        SRR5088844_GSM2420290_Pt105_On_AE373241-6_Homo_sapiens_RNA-Seq_2
        74.9%
        48%
        61.2
        SRR5088845_GSM2420291_Pt108_On_AE373243-6_Homo_sapiens_RNA-Seq_1
        83.2%
        47%
        52.8
        SRR5088845_GSM2420291_Pt108_On_AE373243-6_Homo_sapiens_RNA-Seq_2
        82.1%
        47%
        52.8
        SRR5088846_GSM2420292_Pt77_Pre_AD733591-7_Homo_sapiens_RNA-Seq_1
        87.1%
        47%
        50.5
        SRR5088846_GSM2420292_Pt77_Pre_AD733591-7_Homo_sapiens_RNA-Seq_2
        83.9%
        47%
        50.5
        SRR5088847_GSM2420293_Pt77_On_AD733629-8_Homo_sapiens_RNA-Seq_1
        78.3%
        47%
        53.9
        SRR5088847_GSM2420293_Pt77_On_AD733629-8_Homo_sapiens_RNA-Seq_2
        73.7%
        48%
        53.9
        SRR5088848_GSM2420294_Pt79_On_AD733628-6_Homo_sapiens_RNA-Seq_1
        72.9%
        46%
        56.7
        SRR5088848_GSM2420294_Pt79_On_AD733628-6_Homo_sapiens_RNA-Seq_2
        68.7%
        47%
        56.7
        SRR5088849_GSM2420295_Pt79_Pre_AD733587-5_Homo_sapiens_RNA-Seq_1
        81.2%
        46%
        51.7
        SRR5088849_GSM2420295_Pt79_Pre_AD733587-5_Homo_sapiens_RNA-Seq_2
        77.6%
        47%
        51.7
        SRR5088850_GSM2420296_Pt84_Pre_AD486532-5_Homo_sapiens_RNA-Seq_1
        80.8%
        47%
        49.5
        SRR5088850_GSM2420296_Pt84_Pre_AD486532-5_Homo_sapiens_RNA-Seq_2
        77.6%
        47%
        49.5
        SRR5088851_GSM2420297_Pt84_On_AD495199-6_Homo_sapiens_RNA-Seq_1
        78.7%
        47%
        52.4
        SRR5088851_GSM2420297_Pt84_On_AD495199-6_Homo_sapiens_RNA-Seq_2
        75.5%
        47%
        52.4
        SRR5088852_GSM2420298_Pt87_On_AD495198-6_Homo_sapiens_RNA-Seq_1
        83.1%
        46%
        51.8
        SRR5088852_GSM2420298_Pt87_On_AD495198-6_Homo_sapiens_RNA-Seq_2
        79.2%
        47%
        51.8
        SRR5088853_GSM2420299_Pt98_Pre_AD733586-8_Homo_sapiens_RNA-Seq_1
        79.5%
        47%
        51.5
        SRR5088853_GSM2420299_Pt98_Pre_AD733586-8_Homo_sapiens_RNA-Seq_2
        78.0%
        47%
        51.5
        SRR5088854_GSM2420300_Pt98_On_AE086717-6_Homo_sapiens_RNA-Seq_1
        80.8%
        46%
        51.4
        SRR5088854_GSM2420300_Pt98_On_AE086717-6_Homo_sapiens_RNA-Seq_2
        77.6%
        46%
        51.4
        SRR5088855_GSM2420301_Pt62_On_AD635728-5_Homo_sapiens_RNA-Seq_1
        84.6%
        45%
        50.4
        SRR5088855_GSM2420301_Pt62_On_AD635728-5_Homo_sapiens_RNA-Seq_2
        81.9%
        46%
        50.4
        SRR5088856_GSM2420302_Pt62_Pre_AD608303-5_Homo_sapiens_RNA-Seq_1
        87.4%
        48%
        58.4
        SRR5088856_GSM2420302_Pt62_Pre_AD608303-5_Homo_sapiens_RNA-Seq_2
        85.2%
        48%
        58.4
        SRR5088857_GSM2420303_Pt65_Pre_AD793919-6_Homo_sapiens_RNA-Seq_1
        80.0%
        47%
        59.4
        SRR5088857_GSM2420303_Pt65_Pre_AD793919-6_Homo_sapiens_RNA-Seq_2
        76.5%
        48%
        59.4
        SRR5088858_GSM2420304_Pt65_On_AD796996-5_Homo_sapiens_RNA-Seq_1
        82.8%
        46%
        52.1
        SRR5088858_GSM2420304_Pt65_On_AD796996-5_Homo_sapiens_RNA-Seq_2
        79.5%
        47%
        52.1
        SRR5088859_GSM2420305_Pt68_On_AD635729-6_Homo_sapiens_RNA-Seq_1
        77.5%
        46%
        52.2
        SRR5088859_GSM2420305_Pt68_On_AD635729-6_Homo_sapiens_RNA-Seq_2
        72.7%
        47%
        52.2
        SRR5088860_GSM2420306_Pt69_On_AD635730-6_Homo_sapiens_RNA-Seq_1
        82.7%
        50%
        51.7
        SRR5088860_GSM2420306_Pt69_On_AD635730-6_Homo_sapiens_RNA-Seq_2
        79.5%
        50%
        51.7
        SRR5088861_GSM2420307_Pt72_Pre_AD793922-5_Homo_sapiens_RNA-Seq_1
        88.0%
        46%
        50.8
        SRR5088861_GSM2420307_Pt72_Pre_AD793922-5_Homo_sapiens_RNA-Seq_2
        84.5%
        46%
        50.8
        SRR5088862_GSM2420308_Pt78_On_AE148748-6_Homo_sapiens_RNA-Seq_1
        89.9%
        46%
        58.0
        SRR5088862_GSM2420308_Pt78_On_AE148748-6_Homo_sapiens_RNA-Seq_2
        88.5%
        46%
        58.0
        SRR5088864_GSM2420310_Pt78_Pre_AD467018-5_Homo_sapiens_RNA-Seq_1
        87.8%
        45%
        52.9
        SRR5088864_GSM2420310_Pt78_Pre_AD467018-5_Homo_sapiens_RNA-Seq_2
        87.5%
        46%
        52.9
        SRR5088865_GSM2420311_Pt80_On_AD467874-5_Homo_sapiens_RNA-Seq_1
        75.8%
        47%
        62.8
        SRR5088865_GSM2420311_Pt80_On_AD467874-5_Homo_sapiens_RNA-Seq_2
        70.7%
        47%
        62.8
        SRR5088866_GSM2420312_Pt90_Pre_AD467873-6_Homo_sapiens_RNA-Seq_1
        85.7%
        48%
        62.8
        SRR5088866_GSM2420312_Pt90_Pre_AD467873-6_Homo_sapiens_RNA-Seq_2
        81.3%
        48%
        62.8
        SRR5088867_GSM2420313_Pt92_Pre_AE134060-5_Homo_sapiens_RNA-Seq_1
        77.3%
        47%
        50.4
        SRR5088867_GSM2420313_Pt92_Pre_AE134060-5_Homo_sapiens_RNA-Seq_2
        73.8%
        47%
        50.4
        SRR5088870_GSM2420316_Pt92_On_AE148750-5_Homo_sapiens_RNA-Seq_1
        81.0%
        47%
        49.1
        SRR5088870_GSM2420316_Pt92_On_AE148750-5_Homo_sapiens_RNA-Seq_2
        77.6%
        48%
        49.1
        SRR5088871_GSM2420317_Pt103_On_AE134059-6_Homo_sapiens_RNA-Seq_1
        76.1%
        47%
        50.6
        SRR5088871_GSM2420317_Pt103_On_AE134059-6_Homo_sapiens_RNA-Seq_2
        73.0%
        47%
        50.6
        SRR5088872_GSM2420318_Pt103_Pre_AE134058-2_Homo_sapiens_RNA-Seq_1
        93.0%
        50%
        62.0
        SRR5088872_GSM2420318_Pt103_Pre_AE134058-2_Homo_sapiens_RNA-Seq_2
        90.7%
        50%
        62.0
        SRR5088873_GSM2420319_Pt109_On_AE527955-6_Homo_sapiens_RNA-Seq_1
        78.6%
        47%
        53.4
        SRR5088873_GSM2420319_Pt109_On_AE527955-6_Homo_sapiens_RNA-Seq_2
        75.1%
        47%
        53.4
        SRR5088874_GSM2420320_Pt109_On_AE527955-5_Homo_sapiens_RNA-Seq_1
        79.9%
        47%
        49.1
        SRR5088874_GSM2420320_Pt109_On_AE527955-5_Homo_sapiens_RNA-Seq_2
        76.3%
        48%
        49.1
        SRR5088877_GSM2420323_Pt3_On_E9047638-6_Homo_sapiens_RNA-Seq_1
        80.9%
        46%
        50.4
        SRR5088877_GSM2420323_Pt3_On_E9047638-6_Homo_sapiens_RNA-Seq_2
        79.1%
        46%
        50.4
        SRR5088878_GSM2420324_Pt3_Pre_E9024733-3_Homo_sapiens_RNA-Seq_1
        78.4%
        46%
        52.9
        SRR5088878_GSM2420324_Pt3_Pre_E9024733-3_Homo_sapiens_RNA-Seq_2
        75.2%
        46%
        52.9
        SRR5088879_GSM2420325_Pt4_On_E9047643-7_Homo_sapiens_RNA-Seq_1
        81.3%
        47%
        53.4
        SRR5088879_GSM2420325_Pt4_On_E9047643-7_Homo_sapiens_RNA-Seq_2
        78.6%
        47%
        53.4
        SRR5088880_GSM2420326_Pt4_Pre_E9021023-6_Homo_sapiens_RNA-Seq_1
        82.0%
        47%
        60.8
        SRR5088880_GSM2420326_Pt4_Pre_E9021023-6_Homo_sapiens_RNA-Seq_2
        78.2%
        47%
        60.8
        SRR5088882_GSM2420328_Pt5_On_E9047635-6_Homo_sapiens_RNA-Seq_1
        77.9%
        46%
        50.5
        SRR5088882_GSM2420328_Pt5_On_E9047635-6_Homo_sapiens_RNA-Seq_2
        76.2%
        46%
        50.5
        SRR5088883_GSM2420329_Pt5_Pre_E9021022-6_Homo_sapiens_RNA-Seq_1
        88.9%
        47%
        58.5
        SRR5088883_GSM2420329_Pt5_Pre_E9021022-6_Homo_sapiens_RNA-Seq_2
        86.7%
        47%
        58.5
        SRR5088885_GSM2420331_Pt9_Pre_E9021024-6_Homo_sapiens_RNA-Seq_1
        75.8%
        46%
        49.4
        SRR5088885_GSM2420331_Pt9_Pre_E9021024-6_Homo_sapiens_RNA-Seq_2
        71.4%
        46%
        49.4
        SRR5088886_GSM2420332_Pt9_On_E9047644-7_Homo_sapiens_RNA-Seq_1
        70.3%
        47%
        53.6
        SRR5088886_GSM2420332_Pt9_On_E9047644-7_Homo_sapiens_RNA-Seq_2
        68.0%
        47%
        53.6
        SRR5088887_GSM2420333_Pt10_Pre_E9047565-6_Homo_sapiens_RNA-Seq_2
        80.1%
        46%
        88.4
        SRR5088888_GSM2420334_Pt10_On_E9047632-6_Homo_sapiens_RNA-Seq_1
        76.4%
        45%
        53.4
        SRR5088888_GSM2420334_Pt10_On_E9047632-6_Homo_sapiens_RNA-Seq_2
        73.3%
        46%
        53.4
        SRR5088889_GSM2420335_Pt17_On_E9261162-5_Homo_sapiens_RNA-Seq_1
        77.5%
        46%
        55.1
        SRR5088889_GSM2420335_Pt17_On_E9261162-5_Homo_sapiens_RNA-Seq_2
        72.8%
        46%
        55.1
        SRR5088890_GSM2420336_Pt17_Pre_E9047563-6_Homo_sapiens_RNA-Seq_1
        74.1%
        45%
        55.0
        SRR5088890_GSM2420336_Pt17_Pre_E9047563-6_Homo_sapiens_RNA-Seq_2
        70.6%
        46%
        55.0
        SRR5088891_GSM2420337_Pt18_Pre_E9024732-6_Homo_sapiens_RNA-Seq_1
        81.3%
        46%
        51.9
        SRR5088891_GSM2420337_Pt18_Pre_E9024732-6_Homo_sapiens_RNA-Seq_2
        77.7%
        47%
        51.9
        SRR5088892_GSM2420338_Pt18_On_E9261163-5_Homo_sapiens_RNA-Seq_1
        76.4%
        46%
        50.3
        SRR5088892_GSM2420338_Pt18_On_E9261163-5_Homo_sapiens_RNA-Seq_2
        72.3%
        47%
        50.3
        SRR5088893_GSM2420339_Pt32_On_E9414883-5_Homo_sapiens_RNA-Seq_1
        81.1%
        45%
        52.6
        SRR5088893_GSM2420339_Pt32_On_E9414883-5_Homo_sapiens_RNA-Seq_2
        78.6%
        45%
        52.6
        SRR5088894_GSM2420340_Pt38_On_E9414881-5_Homo_sapiens_RNA-Seq_1
        78.4%
        47%
        68.8
        SRR5088894_GSM2420340_Pt38_On_E9414881-5_Homo_sapiens_RNA-Seq_2
        74.4%
        48%
        68.8
        SRR5088895_GSM2420341_Pt38_Pre_E9200719-6_Homo_sapiens_RNA-Seq_1
        73.9%
        47%
        55.8
        SRR5088895_GSM2420341_Pt38_Pre_E9200719-6_Homo_sapiens_RNA-Seq_2
        72.4%
        47%
        55.8
        SRR5088896_GSM2420342_Pt48_On_E9047631-6_Homo_sapiens_RNA-Seq_1
        84.2%
        48%
        63.4
        SRR5088896_GSM2420342_Pt48_On_E9047631-6_Homo_sapiens_RNA-Seq_2
        82.1%
        48%
        63.4
        SRR5088897_GSM2420343_Pt48_Pre_E9047561-7_Homo_sapiens_RNA-Seq_1
        81.5%
        47%
        52.3
        SRR5088897_GSM2420343_Pt48_Pre_E9047561-7_Homo_sapiens_RNA-Seq_2
        79.9%
        47%
        52.3
        SRR5088898_GSM2420344_Pt36_Pre_AD467095-6_Homo_sapiens_RNA-Seq_1
        81.7%
        47%
        50.4
        SRR5088898_GSM2420344_Pt36_Pre_AD467095-6_Homo_sapiens_RNA-Seq_2
        79.7%
        48%
        50.4
        SRR5088899_GSM2420345_Pt36_On_AD495182-6_Homo_sapiens_RNA-Seq_1
        80.9%
        49%
        56.1
        SRR5088899_GSM2420345_Pt36_On_AD495182-6_Homo_sapiens_RNA-Seq_2
        78.9%
        49%
        56.1
        SRR5088900_GSM2420346_Pt37_Pre_AD502452-5_Homo_sapiens_RNA-Seq_1
        84.2%
        47%
        58.5
        SRR5088900_GSM2420346_Pt37_Pre_AD502452-5_Homo_sapiens_RNA-Seq_2
        82.6%
        47%
        58.5
        SRR5088903_GSM2420349_Pt37_On_AD495183-5_Homo_sapiens_RNA-Seq_1
        88.5%
        46%
        56.7
        SRR5088903_GSM2420349_Pt37_On_AD495183-5_Homo_sapiens_RNA-Seq_2
        86.6%
        47%
        56.7
        SRR5088904_GSM2420350_Pt46_Pre_AD467096-6_Homo_sapiens_RNA-Seq_1
        85.0%
        48%
        55.9
        SRR5088904_GSM2420350_Pt46_Pre_AD467096-6_Homo_sapiens_RNA-Seq_2
        82.2%
        49%
        55.9
        SRR5088905_GSM2420351_Pt46_On_AD781834-6_Homo_sapiens_RNA-Seq_1
        89.2%
        46%
        54.0
        SRR5088905_GSM2420351_Pt46_On_AD781834-6_Homo_sapiens_RNA-Seq_2
        87.2%
        47%
        54.0
        SRR5088906_GSM2420352_Pt24_Pre_AD436687-5_Homo_sapiens_RNA-Seq_1
        82.9%
        46%
        51.0
        SRR5088906_GSM2420352_Pt24_Pre_AD436687-5_Homo_sapiens_RNA-Seq_2
        79.9%
        46%
        51.0
        SRR5088907_GSM2420353_Pt27_On_AD467934-5_Homo_sapiens_RNA-Seq_1
        75.1%
        47%
        52.6
        SRR5088907_GSM2420353_Pt27_On_AD467934-5_Homo_sapiens_RNA-Seq_2
        71.4%
        47%
        52.6
        SRR5088908_GSM2420354_Pt27_Pre_AD453873-5_Homo_sapiens_RNA-Seq_1
        90.0%
        45%
        51.5
        SRR5088908_GSM2420354_Pt27_Pre_AD453873-5_Homo_sapiens_RNA-Seq_2
        87.3%
        45%
        51.5
        SRR5088909_GSM2420355_Pt29_Pre_AD497504-5_Homo_sapiens_RNA-Seq_1
        80.3%
        46%
        50.5
        SRR5088909_GSM2420355_Pt29_Pre_AD497504-5_Homo_sapiens_RNA-Seq_2
        78.5%
        46%
        50.5
        SRR5088910_GSM2420356_Pt30_On_AD505620-6_Homo_sapiens_RNA-Seq_1
        77.7%
        48%
        50.3
        SRR5088910_GSM2420356_Pt30_On_AD505620-6_Homo_sapiens_RNA-Seq_2
        74.7%
        48%
        50.3
        SRR5088911_GSM2420357_Pt30_Pre_AD497503-5_Homo_sapiens_RNA-Seq_1
        74.1%
        46%
        50.7
        SRR5088911_GSM2420357_Pt30_Pre_AD497503-5_Homo_sapiens_RNA-Seq_2
        71.4%
        46%
        50.7
        SRR5088912_GSM2420358_Pt31_On_AD467932-6_Homo_sapiens_RNA-Seq_1
        74.0%
        47%
        52.8
        SRR5088912_GSM2420358_Pt31_On_AD467932-6_Homo_sapiens_RNA-Seq_2
        71.2%
        47%
        52.8
        SRR5088913_GSM2420359_Pt31_Pre_AD453872-5_Homo_sapiens_RNA-Seq_1
        83.9%
        46%
        50.2
        SRR5088913_GSM2420359_Pt31_Pre_AD453872-5_Homo_sapiens_RNA-Seq_2
        81.6%
        46%
        50.2
        SRR5088914_GSM2420360_Pt8_Pre_AD153354-6_Homo_sapiens_RNA-Seq_1
        78.9%
        47%
        52.4
        SRR5088914_GSM2420360_Pt8_Pre_AD153354-6_Homo_sapiens_RNA-Seq_2
        74.1%
        47%
        52.4
        SRR5088915_GSM2420361_Pt8_On_AD167380-7_Homo_sapiens_RNA-Seq_1
        77.3%
        48%
        52.6
        SRR5088915_GSM2420361_Pt8_On_AD167380-7_Homo_sapiens_RNA-Seq_2
        73.6%
        48%
        52.6
        SRR5088916_GSM2420362_Pt11_Pre_AD153352-6_Homo_sapiens_RNA-Seq_1
        79.7%
        45%
        54.4
        SRR5088916_GSM2420362_Pt11_Pre_AD153352-6_Homo_sapiens_RNA-Seq_2
        77.6%
        45%
        54.4
        SRR5088917_GSM2420363_Pt11_On_AD314068-6_Homo_sapiens_RNA-Seq_1
        82.8%
        44%
        52.3
        SRR5088917_GSM2420363_Pt11_On_AD314068-6_Homo_sapiens_RNA-Seq_2
        80.1%
        44%
        52.3
        SRR5088918_GSM2420364_Pt13_On_AD314067-6_Homo_sapiens_RNA-Seq_1
        83.2%
        46%
        51.3
        SRR5088918_GSM2420364_Pt13_On_AD314067-6_Homo_sapiens_RNA-Seq_2
        79.5%
        46%
        51.3
        SRR5088919_GSM2420365_Pt16_On_AD167378-6_Homo_sapiens_RNA-Seq_1
        80.4%
        46%
        54.4
        SRR5088919_GSM2420365_Pt16_On_AD167378-6_Homo_sapiens_RNA-Seq_2
        78.3%
        46%
        54.4
        SRR5088920_GSM2420366_Pt26_Pre_AD467789-6_Homo_sapiens_RNA-Seq_1
        74.7%
        45%
        55.4
        SRR5088920_GSM2420366_Pt26_Pre_AD467789-6_Homo_sapiens_RNA-Seq_2
        72.5%
        45%
        55.4
        SRR5088921_GSM2420367_Pt26_On_AD467915-5_Homo_sapiens_RNA-Seq_1
        74.3%
        44%
        53.2
        SRR5088921_GSM2420367_Pt26_On_AD467915-5_Homo_sapiens_RNA-Seq_2
        69.7%
        45%
        53.2
        SRR5088922_GSM2420368_Pt28_Pre_AD297619-6_Homo_sapiens_RNA-Seq_1
        85.6%
        45%
        51.5
        SRR5088922_GSM2420368_Pt28_Pre_AD297619-6_Homo_sapiens_RNA-Seq_2
        82.9%
        45%
        51.5
        SRR5088923_GSM2420369_Pt28_On_AD167375-7_Homo_sapiens_RNA-Seq_1
        80.6%
        46%
        52.1
        SRR5088923_GSM2420369_Pt28_On_AD167375-7_Homo_sapiens_RNA-Seq_2
        78.6%
        47%
        52.1
        SRR5088924_GSM2420370_Pt44_Pre_AD467790-6_Homo_sapiens_RNA-Seq_1
        78.7%
        45%
        52.3
        SRR5088924_GSM2420370_Pt44_Pre_AD467790-6_Homo_sapiens_RNA-Seq_2
        75.1%
        45%
        52.3
        SRR5088925_GSM2420371_Pt44_On_AD167376-6_Homo_sapiens_RNA-Seq_1
        81.9%
        47%
        50.4
        SRR5088925_GSM2420371_Pt44_On_AD167376-6_Homo_sapiens_RNA-Seq_2
        79.5%
        48%
        50.4
        SRR5088926_GSM2420372_Pt106_Pre_AD502250-5_Homo_sapiens_RNA-Seq_1
        80.7%
        47%
        61.1
        SRR5088926_GSM2420372_Pt106_Pre_AD502250-5_Homo_sapiens_RNA-Seq_2
        76.3%
        47%
        61.1
        SRR5088927_GSM2420373_Pt106_On_AD513626-6_Homo_sapiens_RNA-Seq_1
        78.6%
        47%
        49.0
        SRR5088927_GSM2420373_Pt106_On_AD513626-6_Homo_sapiens_RNA-Seq_2
        76.3%
        48%
        49.0
        SRR5088928_GSM2420374_Pt34_On_AD485757-6_Homo_sapiens_RNA-Seq_1
        87.2%
        48%
        50.0
        SRR5088928_GSM2420374_Pt34_On_AD485757-6_Homo_sapiens_RNA-Seq_2
        84.8%
        48%
        50.0
        SRR5088929_GSM2420375_Pt34_Pre_AD466985-6_Homo_sapiens_RNA-Seq_1
        84.5%
        47%
        49.4
        SRR5088929_GSM2420375_Pt34_Pre_AD466985-6_Homo_sapiens_RNA-Seq_2
        82.7%
        48%
        49.4
        SRR5088930_GSM2420376_Pt35_On_AD485758-6_Homo_sapiens_RNA-Seq_1
        81.1%
        48%
        54.9
        SRR5088930_GSM2420376_Pt35_On_AD485758-6_Homo_sapiens_RNA-Seq_2
        78.5%
        49%
        54.9

        FastQC

        FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

        Sequence Quality Histograms

        The mean quality value across each base position in the read. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

        Click a sample row to see a line plot for that dataset.
        Rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Base N Content

        The percentage of base calls at each position for which an N was called. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Sequence Length Distribution

        The distribution of fragment sizes (read lengths) found. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Sequence Duplication Levels

        The relative level of duplication found for every sequence. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Overrepresented sequences

        The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

        No samples found with any adapter contamination > 0.1%